PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G044300.1
Common NameB456_009G044300, LOC105768935
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 524aa    MW: 57343.9 Da    PI: 8.9263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G044300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056183123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Gorai.009G044300.1 61 FICEICNKGFQRDQNLQLHRRGH 83
                        89*******************88 PP

2zf-C2H212.40.00047138160123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H + +
  Gorai.009G044300.1 138 WKCEKCSKRYAVQSDWKAHSKIC 160
                         58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.66E-66083No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0226183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456183IPR007087Zinc finger, C2H2
PfamPF121716.3E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.66E-6133158No hitNo description
SMARTSM00355130138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MMKGLVVDES ISNLTSTSGE VSASTNQEPL SKKKRTLPGN PDPEAEVIAL SPKTLLATNR  60
FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEVVRK KVYVCPETTC VHHHPSRALG  120
DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTREYRCDCG NLFSRRDSFI  180
THRAFCDALA EETARAITAA NQPGSSVSHI NMTNLESQPL LHGYALNATS LNRDQDHRFN  240
ARVEAAGPDS GPPSINLSSS PFLLGHPLPH DENPSQNPSS TTLLPFQAPP ASPHTSATAL  300
LQKAAQMGVT LSKPLQSPVV SMQRPYYYHH QAHMCGSTTF ATSRAWGLSA REELGSEFTH  360
SLSSFGNKAR VTPGFLEQVA NATKSNAGAG AGAAAPSSLL HDMMTSLSGT SELEGSSSFE  420
HSFNGTWITK RNSNKFQENY IDHHNFSETK ESQSCRSDNH EGKGSGSSSS NNIRGNDGLT  480
RDFLGLKAFP HTDIPNLVGL NHHVNSSSAY GQPNQHSETP WQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187100KLKQRTNKEVVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144590.0JX614459.1 Gossypium hirsutum clone NBRI_GE57848 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444679.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A0D2RTZ00.0A0A0D2RTZ0_G
STRINGVIT_04s0008g01160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2456034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]